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The PredictProtein server (Burkhard Rost)
Advanced submission form
PHD PROF TOPITS PredictNLS EvalSec
MaxHom Blast PSI-Blast ProSite ProDom SEG COILS CYSPRED
PP Help

If you don't select anything, the default is that all programs are run! ( ? for programs and thresholds)

Type the required information into the fields Description of field (click on description to get help)
Your email address [ watch typpos -:) ]
Password (only for commercial users)
Which type of prediction do you require?
Specify the format for the returned multiple-sequence alignment
PSI-BLAST Run iterated PSI-BLAST
Output options
BLAST Return BLAST output from SWISS-PROT search
PHD msf PHD rdb PHD col PHD casp Return additional PHD output
PROF msf PROF rdb PROF col PROF casp PROF only casp Return additional PROF output
TOPITS hssp TOPITS strip TOPITS own Additional TOPITS output
HTML formatted results HTML for printouts
HTML with PHD graphs HTML with PHD graphs for printouts 		Return result in HTML (for WWW browsers)
Results on FTP site, NOT in email (our current default) Results not sent to avoid email floods
keep full sequences
no PSI-BLAST
do NOT align
do NOT filter returned alignment
do NOT filter alignment used for PHD
 Process alignment
NO prosite NO prodom NO seg NO coils NO cyspred
NO PredictNLS NO PHD NO PROF NO ASP 		Switch off default methods
(e.g. to reduce output, or to save time)
One-line name of protein (not necessary)
Specify the format of your sequence(s), alignment, or prediction
Either choose a file with the respective information, or ...


Paste, or type your sequence

  • amino acids in one-letter code
  • any number of white spaces allowed
  • non-standard amino acids to 'X'


  • use SRS6 to get your sequence from a public database

Batch or interactive?
Final action
Wait? How long to wait (status of PP queue)?
Links WWW services for sequence analysis
 Submit to META CUBIC home PROSITE ProDom PredictProtein Mail to PP Help

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