Sequence 1
Name:1a1x
Sequence:(Please input the normal format sequence!!)
GSAGEDVGAPPDHLWVHQEGIYRDEYQRTWVAVVEEETSFLRARVQQIQVPLGDAARPSH
LLTSQLPLMWQLYPEERYMDNNSRLWQIQHHLMVRGVQELLLKLLPDD
Sequence 2
Name:1jsg
Sequence:(Please input the normal format sequence!!)
MAECPTLGEAVTDHPDRLWAWEKFVYLDEKQHAWLPLTIEIKDRLQLRVLLRREDVVLGRPMTPTQIGPSLLPIM
WQLYPDGRYRSSDSSFWRLVYHIKIDGVEDMLLELLPDD
Result
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FASTA searches a protein or DNA sequence
data bank
version 3.4t05 Aug 18, 2001
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
1a1x.txt, 108 aa
vs 1jsg.txt library
114 residues in 1 sequences
FASTA (3.42 Sept 2001) function [optimized,
BL50 matrix (15:-5)] ktup: 2
join: 36, opt: 24, gap-pen: -12/-2, width: 16
The best scores are: opt
1jsg ( 114) 291
>>1jsg (114 aa)
initn: 221 init1: 221 opt: 291
Smith-Waterman score: 291; 40.187% identity (40.952% ungapped) in 107 aa overlap
(4-108:8-114)
10 20 30 40 50
1a1x GSAGEDVGAPPDHLWVHQEGIYRDEYQRTWVAVVEEETSFLRARV--QQIQVPLGD
**** :: : ::.::. .. .: :: :..:. .. : . :. :: .. .: ::
1jsg MAECPTLGEAVTDHPDRLWAWEKFVYLDEKQHAWLPLTIEIKDRLQLRVLLRREDVVLGR
10 20 30 40 50 60
60 70 80 90 100
1a1x AARPSHLLTSQLPLMWQLYPEERYMDNNSRLWQIQHHLMVRGVQELLLKLLPDD
**** :... : ::.::::::. :: ...: .:.. .:. . ::...::.:::::
1jsg PMTPTQIGPSLLPIMWQLYPDGRYRSSDSSFWRLVYHIKIDGVEDMLLELLPDD
70 80 90 100 110
108 residues in 1 query sequences
114 residues in 1 library sequences
Scomplib [34t05]
start: Fri Dec 14 18:40:02 2001 done: Fri Dec 14 18:40:02 2001
Scan time: 0.000 Display time: 0.000
Function used was FASTA [version 3.4t05 Aug 18, 2001]